#    This program is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    This program is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.
#
#    You should have received a copy of the GNU General Public License
#    along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
#    Code base of Animesh Sharma [ sharma.animesh@gmail.com ]

#!/usr/bin/perl
open (FILENAME,"ara1") ||
die "can't open the file: $!";
while ($file = <FILENAME>)
{
chomp ($file);
if ($file =~ /CDS/)
{
$file =~ s/\(//;
$file =~ s/\)//;
$file =~ s/join//;
$file =~ s/CDS//;
$file =~ s/" "//;
push(@cds,$file);
}
}
foreach $w (@cds)
{
@done=split(/,/,$w);
foreach $ww (@done)
{
@no=split(/\.\./,$ww);
$ans=(@no[1])-@no[0];
print "\t CDS \n $w \n cds len\n $ans"; 
}

}

